This file contains all prompt template functions used in mLLMCelltype.
These functions create various prompts for different stages of the cell type annotation process.
Create prompt for cell type annotation
Usage
create_annotation_prompt(input, tissue_name, top_gene_count = 10)
Arguments
- input
Either the differential gene table returned by Seurat FindAllMarkers() function, or a list of genes
- tissue_name
The name of the tissue
- top_gene_count
Number of top differential genes to use per cluster
Value
A list containing the prompt string and expected count of responses
