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This file contains all prompt template functions used in mLLMCelltype. These functions create various prompts for different stages of the cell type annotation process. Create prompt for cell type annotation

Usage

create_annotation_prompt(input, tissue_name, top_gene_count = 10)

Arguments

input

Either a data frame from Seurat's FindAllMarkers() or a list with 'genes' field for each cluster

tissue_name

Tissue context for the annotation (e.g., 'human PBMC', 'mouse brain')

top_gene_count

Number of top genes to use per cluster when input is from Seurat. Default: 10

Value

Character string containing the formatted prompt