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Create prompt for cell type annotation

Source: R/prompt_templates.R
create_annotation_prompt.Rd

Create prompt for cell type annotation

Usage

create_annotation_prompt(input, tissue_name, top_gene_count = 10)

Arguments

input

Either a data frame from Seurat's FindAllMarkers() or a list for each cluster where each element is either a character vector of genes or a list containing a genes field

tissue_name

Tissue context for the annotation (e.g., 'human PBMC', 'mouse brain')

top_gene_count

Number of top genes to use per cluster when input is from Seurat. Default: 10

Value

Character string containing the formatted prompt