Getting Started

Get up and running with ChatSpatial quickly and easily.

Table of contents

  1. What You’ll Learn
  2. Prerequisites
  3. Next Steps

Welcome to ChatSpatial! This section will help you get started with spatial transcriptomics analysis through natural language interaction.

What You’ll Learn

In this section, you’ll learn how to:

  • Install and configure ChatSpatial
  • Set up your first spatial analysis environment
  • Run your first spatial transcriptomics analysis
  • Understand the basic concepts and workflow

Prerequisites

Before you begin, make sure you have:

  • Python 3.10 or higher installed (required for MCP)
  • Basic familiarity with spatial transcriptomics concepts
  • Access to Claude Desktop or another MCP-compatible client

Next Steps

  1. Installation - Install ChatSpatial and its dependencies
  2. Quick Start - Run your first analysis in minutes
  3. Configuration - Customize ChatSpatial for your needs

Need help? Check out our troubleshooting guide or ask a question.

Table of contents